Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------APSAAQCKEE-RRLGLNACKPVVYGRPPSP-----------------------QCCQRIRVTHIECVCPVVTPKLAALID------------VNRAIRVIEGCGRRVPRHFKCGSKLSPPPIHMRFLQADL
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-----------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28095 for 591 contacts (-47.5/contact) +
2D Compatibility (PS) -7703 + (NN) 1305 + (LL) 992
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: -36101.0 ( -61.08 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: