Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIRSAAASLSPCLSA-------------AGNVRAAVPP--------TCCSKVGSLIKTAPKC------LCAVLLSPLAKQAGIKPGIAITIPKRCNIGNRPAGKKCGSK
2H2M Chain:A ((1-108))
----MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISK---FWKSHKTKIRES-
General information:
TITO was launched using:
RESULT:
Template:
2H2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36555 for 495 contacts (-73.8/contact) +
2D Compatibility (PS) -8322 + (NN) -1830 + (LL) 272
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -50635.0 ( -102.29 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_2H2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H2M-query.scw
PDB file :
Tito_Scwrl_2H2M.pdb
: