Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGGCNAG--QLSVCAVAITSGSP-PSAECCSNLRA-----------QQGCLCQYAKDPNYGRY--ISSPYARQTVASCGIPVPKC
1AFH Chain:A ((1-80))
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29295 for 437 contacts (-67.0/contact) +
2D Compatibility (PS) -6610 + (NN) -600 + (LL) 424
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -39731.0 ( -90.92 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: