Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---AVQCGQVTQLMAPCMPYLSGAPGM-TPYGICCNSLRVLAELAATTADRVAACNC-VRAAAGAGGFPPVDFTRAAGLPAACGL--KINFAISPNMDCNQVTDEP---------------
4HR1 Chain:A ((3-120))
FNGAQTVIQKISWLRTAIAFLKG---YMETTGATKKELEQVEKLKERVDEIATAVNWDVYAQYARGDFNLLSDDEYKEIQKALLVLEDIKEQIIVEMLRVGLAQGQMGTLKISDYLDSLDS
General information:
TITO was launched using:
RESULT:
Template:
4HR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51187 for 552 contacts (-92.7/contact) +
2D Compatibility (PS) -10142 + (NN) -4141 + (LL) -168
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -70488.0 ( -127.70 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_4HR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HR1-query.scw
PDB file :
Tito_Scwrl_4HR1.pdb
: