Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AQCNAGQLIVCAPAIIGGAAPTAACCSNLRAQQGCFCEFARNPAYASYIKSQTARKAIAACRVALPRCP
3A1Y Chain:A ((1-58))
----MEYVYAALLLHSVGKEINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEKAA-------
General information:
TITO was launched using:
RESULT:
Template:
3A1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23040 for 340 contacts (-67.8/contact) +
2D Compatibility (PS) -6222 + (NN) -1064 + (LL) 628
1D Compatibility (HY) 800 + (ID) 350
Total energy: -29248.0 ( -86.02 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_3A1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A1Y-query.scw
PDB file :
Tito_Scwrl_3A1Y.pdb
: