Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAATTCNAG--QLAACAAAVMTGAK-PSAACCSNLRA-----------QQRCFCNYAKNPVYGRY--IKSPYVRQTVATCGIVLPRC
1AFH Chain:A ((2-80))
---ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37414 for 432 contacts (-86.6/contact) +
2D Compatibility (PS) -6133 + (NN) 2935 + (LL) 692
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -42770.0 ( -99.00 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: