Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------QSGCTNVL--ISMAPCLSYV-----------------TGSSSTPSSSCCSQLASVVLSQPQCLCAALNGGGA--------SLGLNINETLALALPGACKVQTPPVSKCNGKFKNNFLPEI
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNF--RAPQRCDLDVSGGRCS--
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50620 for 542 contacts (-93.4/contact) +
2D Compatibility (PS) -9013 + (NN) -106 + (LL) 656
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -65133.0 ( -120.17 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: