Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------QQQPANCNGQLNQ--LIPCLSYVQGQA-----------------TQPAQSCCSGLKSIAGSNPACLCSLISANAGSIPG---------INSTLALELPAKCNLQGLNPSLCSVFISGFLPLR
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM-ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--APQRCDLDVSGGRCS-
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38490 for 570 contacts (-67.5/contact) +
2D Compatibility (PS) -9159 + (NN) -3425 + (LL) 248
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -55026.0 ( -96.54 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: