Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------QQQSCSDWTQ---LLDCQNAA-----------------SDPSATPSGECCNRIRQYQNAPDCLCTMLLAARNAAQS-----TGLPFNLQAALSIPAKCHVQVPSGYSCAGIPIPSS
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35623 for 561 contacts (-63.5/contact) +
2D Compatibility (PS) -9735 + (NN) -5557 + (LL) 0
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -55365.0 ( -98.69 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: