Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDCSAAQQAMFPCLSAAVGGNPPPPSVACCAAMKSVSKLEMCQCLVNQTSTVPGLNMTAARNIPANCNISAAADCS
2RKN Chain:A ((3-76))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPT--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28845 for 508 contacts (-56.8/contact) +
2D Compatibility (PS) -8279 + (NN) -8470 + (LL) 172
1D Compatibility (HY) -800 + (ID) 850
Total energy: -47072.0 ( -92.66 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: