Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGTVTGSLAPCIGYLKGGS--GPSAACCGGVKRLNSAATTTPDRQAACNCLKSA-AGAISGLNPNIAAGLPGKCGVNIPYKISTSTNCATIRA
2RKN Chain:A ((3-75))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGS-FGVDPELASALPKQCGLANAP-------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33576 for 467 contacts (-71.9/contact) +
2D Compatibility (PS) -7480 + (NN) -1468 + (LL) 1480
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -44394.0 ( -95.06 by residue)
QMean score : 0.148
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: