Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIDNHFMSIALSLAEKTLGNVAPNPAVGCIIVKDGVVVGEGHTGIGGRPHAEVAALQSAKGSTHGATMYVTLEPCCHYGVTEPCIIEIIRSGIKKVVVAAIDPDKRVSGGGIKALEEAGITVEQGIMQEEAEKLNIGFFTTRKLHRPFIACKIATTLDGKIATFKGDSKWITSGSTRNWVHELRAKYDAIMIGSNTLINDDPLLTCR-LPGLESRS---PIRLIIDSQEKLKEKHNVVKTADKVTTWVIINKKIEKKIKNINYLIVNSNDKPIPASHTGMTSNQGEYSTDKVCLKDMALKLVSEIGITRLLVEGGRVLTTELLKHDLIDRLIICRSGKILGNDAIPFIGNLEIQSINNCYQFKKAEIIDFDEDIVEVWDKLQ |
3ZPG Chain:A ((28-371)) | --DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICEDLAAKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGES--ITGSAARQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKILENPETV----MVMGPYRQELADLG--VIQLEIQP---------------------LKTLLQTLSKQYQIYDVLIEAGATLSSAFLQEGLIDEMISYVAPTLLGQSARAMF-NADFEYMAQQLRFKLLDVIQLDQDIRLRLIPT- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ZPG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168448 for 2783 contacts (-60.5/contact) +
2D Compatibility (PS) -36759 + (NN) -17454 + (LL) 2032
1D Compatibility (HY) -27200 + (ID) 6150
Total energy: -253979.0 ( -91.26 by residue)
QMean score : 0.518
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