Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAACRGYCRKIYLAIDNVLYAI--NETMVMWKKELKSL-----------VKGNPTIFNDKLAISTLDDCLYMLDMRMIVQSGPIISPVIMIVTK
1KB0 Chain:A ((72-146))
--TPVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSL
General information:
TITO was launched using:
RESULT:
Template:
1KB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29180 for 367 contacts (-79.5/contact) +
2D Compatibility (PS) -6435 + (NN) 4169 + (LL) 36
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -33960.0 ( -92.53 by residue)
QMean score : 0.102
(partial model without unconserved sides chains):
PDB file :
Tito_1KB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KB0-query.scw
PDB file :
Tito_Scwrl_1KB0.pdb
: