Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEEKIPKNKQEQLGQPKIPVSSQVSNTQNNNQQPNLQSENGSKLPIAAASMLAITGIAFRGSYCSLPRNVSSRNSNRGLLSCCYYNPISL
3VKG Chain:A ((2565-2593))
----------KDQVGEPIIPESWIVAQAQLSNQQSTIVS----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6179 for 105 contacts (58.8/contact) +
2D Compatibility (PS) -2931 + (NN) -1887 + (LL) 3084
1D Compatibility (HY) -1200 + (ID) 600
Total energy: 2645.0 ( 25.19 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3VKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VKG-query.scw
PDB file :
Tito_Scwrl_3VKG.pdb
: