Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIVLKLPEVTVNWSYPVLNFDLSFRIILISFLSVAFL-IVLPAKNFS------FSEMLSFFAYTISSLCAILSKQIISVIIFCELMAISASFIIAAGCK--DN-GPAIRYACVHFFVGIILTAGLAIQN---------------------PNLIIMGLLIICACFPFSFWVVDAYPAASLHGASYLSLFTTKISFLIA-LLHTYNLWQDH----AEILAFLGTITAIYGIIFTSLEQNIRRFLAYNVVGQMGILIMTGSLLSHSKNAIPLLILNIIFSIVYQLLLTAVANSIILR---TKAVNFNRVG---KFMSAEGIYALIAILTMAAFPGTAGFISKSYIAVEIKMNGTNLELYKNLHKILNLSLYLSVGLKFLYYIFITKSRSKLLAE--KG---GGVAMIILASICVIAGNPYLPIYNKPSIFNLAYNTKNIWSQLNLLLCVTLLFIPLRKLFLPRINLKMDIDWIFRALIPYVVSLFNKLIFKMRKISAGALQNLTNSLTNLYFNNANKLKEALSYDSVSFISASSLFLMSILLVLLCLNH |
| 3RKO Chain:N ((67-476)) | ------------------MRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLAT-ASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVG--AVVVGSAIG-LYYYLRVAVSLYLHAPEQP----SNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -420741 for 3178 contacts (-132.4/contact) +
2D Compatibility (PS) -36210 + (NN) -12816 + (LL) 12324
1D Compatibility (HY) -22800 + (ID) 2800
Total energy: -483043.0 ( -152.00 by residue)
QMean score : 0.390
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