Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIKVQRKKMELGAEVADQFLSEMNQTKIKIQDAKEATETARNVSKSFAQNAKDKNTELHDKVVNFTKKAETASENAEDFAREAFLSKQSTKTLKQETKEL
1USE Chain:A ((349-371))
-------------QELLEEVKKELQKVKEEIIEAFV-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1USE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4896 for 82 contacts (59.7/contact) +
2D Compatibility (PS) -2475 + (NN) -1181 + (LL) 6132
1D Compatibility (HY) -800 + (ID) 250
Total energy: 6322.0 ( 77.10 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1USE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1USE-query.scw
PDB file :
Tito_Scwrl_1USE.pdb
: