Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRLSQYYLPTLKEKPAHARIISHQYSLRAGLIKQIASGIYTWLPLGLRVLKNIEGIIRDEMNKSGAIEALMPCVQPASLWRESGR----YDDY-------GKTMLRIRDRHEEDMLFGPTHEEVATDLIRDIVKSYKNLPLCLYQIQWKFRDEVRPRYGVMRGREFL-MKDAYSFNVNYESALNSYNLMYKTYIKIFKRMGLIP--IGVRADTGLIGGNLSHEFHILASTGESTLYYDNKFFELLESEDVKSLKSIYAVADDIHDPKTCPVPQEQLNVSKGIEIGHIFYFGDKYSKPMNAKVTAQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGITWPEAVAPFRVGLINLQTKTAE--YVEIANKIYSTLKSD-EVLYDDTEGSIGVKFAKMDLIGLPWQIIVGKKAVSENIIEIKNRATG---KVEEVQIEEAINYFNVK |
| 1NJ8 Chain:A ((25-371)) | -------------------------------------GCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVK------LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLG-IPYLISKRPEWDKFPG------------AEYTMAFDTIFPD-----------------------------------GRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NJ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -191122 for 2566 contacts (-74.5/contact) +
2D Compatibility (PS) -34175 + (NN) -5886 + (LL) 7064
1D Compatibility (HY) -19600 + (ID) 5050
Total energy: -248769.0 ( -96.95 by residue)
QMean score : 0.421
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