Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDTPFKATSMEDLNDTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLFPKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLENALEALIGAIYIDGGF-AN-VKKFVTKHWEERAKGMLS---LPQDPKTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEKINNSEKTI
4M2Z Chain:A ((5-221))
---------------EQLEKKLGYTFKDKSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFI------RIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLEESE---
General information:
TITO was launched using:
RESULT:
Template:
4M2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85896 for 1533 contacts (-56.0/contact) +
2D Compatibility (PS) -23102 + (NN) -11192 + (LL) 1244
1D Compatibility (HY) -16400 + (ID) 3950
Total energy: -139296.0 ( -90.86 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_4M2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M2Z-query.scw
PDB file :
Tito_Scwrl_4M2Z.pdb
: