Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIGNASKELGKLIANKLNVQPFSAQVSKFADGAINAEVESNLCSQEVYIIQSISPPVNDHLMELLFIIDAVKRSGTKRITTIIPYYGYSRQDRIIKNNNMQSALNAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPLTNLSCFEAFADSIH-----IENLAIVAPDVGAIGRARAFAKTLEKKYEIKLSDKIIIIDKYREKAGTSHVMNVIGEATNKNCVIVDDIVDSGGTLCNAALALKNRRARSVISCITHGVLSGNAIEKISSSSLDKLVTTDTIFH--KLEKTDKIEIVSIANILTHFIQGGKDAS
2H08 Chain:A ((4-301))
IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQD---KKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLMAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFA--------LIHKER------DRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGE
General information:
TITO was launched using:
RESULT:
Template:
2H08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -245407 for 2421 contacts (-101.4/contact) +
2D Compatibility (PS) -31273 + (NN) -16580 + (LL) 1484
1D Compatibility (HY) -25600 + (ID) 5150
Total energy: -322526.0 ( -133.22 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2H08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H08-query.scw
PDB file :
Tito_Scwrl_2H08.pdb
: