Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSILAIDTVGTGGSSIAIIDHDGNCFVEHNSISNSHAESFFQILNTLFNKHNYNYSKLDHLAVVVGPGSFNGIRVGISAAKGINLVTNKPLYGVNALEVQAYAMSLLCANNKKNIRAMIKSSQGFYMQLFDCNLLPLSDPTTTHDAQCLGTRTSGNNYITYMDCNLPKLDASHAGLLVHYRLKNKQKLNEVEALYLNELQYMKLL
4YDU Chain:C ((1-120))
MRILAIDTA-TEACSVALWN-DGTVNAHFELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTL--MTMAQGAWRKNGATRVLAAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEWVTVGTGWQAWPDLGKESGLVLRDGEVLLPAAEDMLPIACQM
General information:
TITO was launched using:
RESULT:
Template:
4YDU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73528 for 865 contacts (-85.0/contact) +
2D Compatibility (PS) -13113 + (NN) -6036 + (LL) 168
1D Compatibility (HY) -8800 + (ID) 1800
Total energy: -103109.0 ( -119.20 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_4YDU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YDU-query.scw
PDB file :
Tito_Scwrl_4YDU.pdb
: