Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDEDLELLKFYYEVGIDCTLTEGNEEKKVEKEKNSKAIQSPTIQAEVQKKEQQSMFPSDWIIEARKLASKCNSMDELRSAVKSFEGCEIKKTSTNTVFSDGNQSAKIMLVGEAPGANEDLKGIPFCGASGMLLDKMLSAINLDRTKVYISNTVFWRPPGNRKPTDLELDMCRPFVEKHIALISPHILILVGGISCYSLLDNTK-TISTLRGRFHTYTNQYLSYSITTAVI--FHPAYLLRQPAQ--KRLAWEDLKKIREYLNSTNNCTGV
1VK2 Chain:A ((27-200))
---------------------------------------------------------------------------------VKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRG-------NPIDWLGGKKVIPTFHPSYLLRNRSNELRRIVLEDIEKAKSFIKKE------
General information:
TITO was launched using:
RESULT:
Template:
1VK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113928 for 1360 contacts (-83.8/contact) +
2D Compatibility (PS) -18615 + (NN) -13043 + (LL) 6448
1D Compatibility (HY) -15200 + (ID) 3150
Total energy: -157488.0 ( -115.80 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1VK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK2-query.scw
PDB file :
Tito_Scwrl_1VK2.pdb
: