Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDNLVCMGIITSPHGIKGAVKVKIFTEKPENISLYGKLISG----SKNYDIDSVSVIGENLVIATINGVNSRNEAEFLRNKKLYVERNKLLKLNDENEFYQSDLVNMEIRLENDELYGYIKSIYNFGSGDILEISVIS----TKKNIMLPFT-KEIFPYVNIKERYITLNMPEFIG
3H9N Chain:A ((2-171))
----IEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENW-RYHNHEIIVKLKGVDDREAAQILANVEIGVDLSVFPEL-EEGDYYWHDLIGCTVVNLEGYTMGTVTEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAGFL
General information:
TITO was launched using:
RESULT:
Template:
3H9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104123 for 1052 contacts (-99.0/contact) +
2D Compatibility (PS) -17344 + (NN) -3273 + (LL) 8
1D Compatibility (HY) -12000 + (ID) 1650
Total energy: -138382.0 ( -131.54 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3H9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H9N-query.scw
PDB file :
Tito_Scwrl_3H9N.pdb
: