Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSQKGVDLAKSKKDISKFETASSNQKKEWETDSKKKAEEIERL-KTLKKKSDEELQEARGKLAEQERLLKYPEAEKSKRCCSIIYCSTYRGTS
2YRQ Chain:A ((45-117))
------------------FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI
General information:
TITO was launched using:
RESULT:
Template:
2YRQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10117 for 262 contacts (38.6/contact) +
2D Compatibility (PS) -6952 + (NN) 1067 + (LL) 928
1D Compatibility (HY) -2000 + (ID) 950
Total energy: 2210.0 ( 8.44 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_2YRQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YRQ-query.scw
PDB file :
Tito_Scwrl_2YRQ.pdb
: