Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSFCVKAPAKINLFLHVVEKKETGYHLIEGLFVFANLSNFLEIKVGEKDFRYDNPIVEFVNSELKISNKYNTVMRAVNLLLRHAPVRTKVTVKVVKNIPTSAGLGSGSSDAGAVIRTLGKLWKIDRPI--LNEIALSVGADVPASIDSKPVLVRGIGEELCYI---NKFSLPTNIVLAKPKKKFLST--------------PEVFSKYGGNFSKPIEWRDDTEKDLLKLLKETENDLQEIAISLVPEIRDVILALESQEGSILSRMSGSGVTCFGIFDSEENAKTAAVNIREKQPEWWVCDAQLIV |
| 3PYD Chain:A ((5-271)) | --SVTVRVPGKVNLYLAVGDRREDGYH--ELTTVFHAVSLVDEVTVRNADVLSLELVGE--GADQLPTDERNLAWQAAELMAEHVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDVPFALHGGTALGTGRGEELATVLSRNTF----HWVLAFADSGLLTSAVYNELDRLREVGDPPRLGEPGPVLAALAAGDPDQLAPLLG------NEMQAAAVSLDPALARALRA-GVEAGALAGIVSGSGPTCAFLCTSASSAIDVGAQLSGAGVCRTVRVATGPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87534 for 2077 contacts (-42.1/contact) +
2D Compatibility (PS) -26679 + (NN) -1812 + (LL) 1888
1D Compatibility (HY) -10000 + (ID) 3850
Total energy: -127987.0 ( -61.62 by residue)
QMean score : 0.291
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