Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTK-FIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
4MCC Chain:A ((3-219))
---IGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLG---------------LLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLR--------------
General information:
TITO was launched using:
RESULT:
Template:
4MCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185578 for 1432 contacts (-129.6/contact) +
2D Compatibility (PS) -21115 + (NN) -3724 + (LL) 784
1D Compatibility (HY) -17600 + (ID) 4000
Total energy: -231233.0 ( -161.48 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4MCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MCC-query.scw
PDB file :
Tito_Scwrl_4MCC.pdb
: