Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVDSHCHLIYFSDDEIPEVISRAEQNGVKILHNICVNADDVPKLLKIASSYNQVYSSIGIHPLDASVENGKCMHADELVELIKNQKVVSIGETGLDFYKS-NNKSNQKKSFASHIEAARITGLPLVIHTRGVDSEVIDMLKSEMKNGPFNGVMHCFTSSKELAHQSIDLGLYISFSGIITFKNASL-LRRIAQDVPRERVLVETDAPY-----LSPEPHRGKKNEPAMVKYVVDCLAELWSASPDKVAEVTTNNFFRLFTKLKLKEIL
1XWY Chain:A ((23-260))
------------------DVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEA--IIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLP-GAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPS-SRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF-----
General information:
TITO was launched using:
RESULT:
Template:
1XWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127158 for 1884 contacts (-67.5/contact) +
2D Compatibility (PS) -25002 + (NN) -13093 + (LL) 2028
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -179525.0 ( -95.29 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_1XWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XWY-query.scw
PDB file :
Tito_Scwrl_1XWY.pdb
: