Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNINIFVFLALSFVTSFNSIQAQILYTWSQVIPDNKLSVRAIIDSNTCPVAYVDGKGVEMLNRSSINNGDHTETICEMIVETGAQNISIDGIQVPILPEKISRIAFIGDTGCRINALFQQECNSVDSWPFKKNLDSIALHEPDLIVHVGDYHYRKTKCRNAQKCGNIYGYNKEAWYADWFEPAKDI--LLQSSFLFVRGNHENCDRAY--EGWFR-YLDSH---PFSSEKCENF-VPGWFL----DI----GPMKFFIFDSSSGEDIFTTQSTIDAFEKQFDKLT--QDS---SDKPTWFLTHRPLWRSPKKEFLTLKSHGNLTQIEAFGDKF-PNNVATIVSGHIHIAQILLMNNVPDQIIVGNGGALLHAQDQEPVYQNIEFSYSNGKNYLAHEIKNFFGFGFSILNLDNH--EFTFYDQ-NNEEMYSAKLTEDFKLEIN |
| 3TGH Chain:A ((2-309)) | ---------------------------------------------------------------------------------------------------CQLRFASLGDWGKDTKGQ---------ILNAKYFKQFIKNERVTFIVSPGSNFIDGVKG-----------LNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQLLKGQG-----DATNY--P-KWIMPNYWYHYFTHFTVSHKDLAAAFIFIDTWVLSS---NFPYKKIHEKAWNDLKSQLSVAKKIADFIIVVGDQPIYSSGYSRGS-------SYLAYYLLPLLKDAEVDLYISGHDNNMEVIEDN-DMAHITCGSGSMSQGKSGM-K-NS-----------KS---LFFSSDIGFCVHELSNNGIVTKFVSSKKGEVIYTHKLNIKKKKTLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TGH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96222 for 2216 contacts (-43.4/contact) +
2D Compatibility (PS) -27181 + (NN) -7902 + (LL) 9108
1D Compatibility (HY) -1600 + (ID) 2100
Total energy: -125897.0 ( -56.81 by residue)
QMean score : 0.356
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