Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRIQRNKIKVEIKKLSHGKDLPLPCYATMQSAGMDLYAALGNSIVLNPLERLLIPTGIVIVIPN-GFEGQIRPRSGLAAKYGITVLNSPGTIDSDYRGEVKVCLINLSNQPYEIKRGDRIAQILIAPVFRVIWDDAERLCTEETERSAGGFGSSGR
1DUD Chain:A ((4-136))
-------KIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDF-----------------
General information:
TITO was launched using:
RESULT:
Template:
1DUD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81265 for 885 contacts (-91.8/contact) +
2D Compatibility (PS) -14045 + (NN) -727 + (LL) 656
1D Compatibility (HY) -8800 + (ID) 2650
Total energy: -106831.0 ( -120.71 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_1DUD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DUD-query.scw
PDB file :
Tito_Scwrl_1DUD.pdb
: