Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGEDCAVLIISEIDQSKESVLVQEYTFTLETIARALINAKERSVDVEVILDKSQLHSKYSVINKLFSNGIPVWIDDKPKIAHNKVIIVDNQK----------------VITGSFNLTKTAKKGNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
4H4A Chain:A ((96-221))
---------------------IVEQIDRAVYSIDLAIYTFTSLFLADSIKRALQRGVIIRIISDGEMVYSKGSQISMLAQLGVPVRVPIT--LMHNKFCIIDGFERVEEIRLLRKRPCYSIVISGSVNWT-----GNWENCIITADDKLTATFQAEFQRMWRAQIQLK--
General information:
TITO was launched using:
RESULT:
Template:
4H4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25957 for 658 contacts (-39.4/contact) +
2D Compatibility (PS) -10311 + (NN) 729 + (LL) 1740
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -37049.0 ( -56.31 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_4H4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H4A-query.scw
PDB file :
Tito_Scwrl_4H4A.pdb
: