Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTFLMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILYSMLFGVSTTLKAIPYSAIKFTSMLGI-FIYGGTGIATVLLGQNFLSYDILLANNVAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK
3GW5 Chain:A ((87-150))
-----------------------------------GFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIF-DNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHY
General information:
TITO was launched using:
RESULT:
Template:
3GW5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48594 for 320 contacts (-151.9/contact) +
2D Compatibility (PS) -6394 + (NN) 806 + (LL) 2548
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -57434.0 ( -179.48 by residue)
QMean score : -0.138
(partial model without unconserved sides chains):
PDB file :
Tito_3GW5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GW5-query.scw
PDB file :
Tito_Scwrl_3GW5.pdb
: