Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSLLAIEKDSNL---VKCHDQLLNEHQGKFRIVEADALYVVEEELIER---PVKVIANLPYNISLALFLKWLNKIKLFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPKEFFPRPKVYSSVITVKPLPTQRFAV-NLEALTKLTRAVFAQRRKMLRNSLQNVTNRTETALENAKLSGNERPKNLTVEQFCLLANNM
4ADV Chain:V ((17-262))
-------------QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT-EPVGERLDQLTVIELDRDLAARLQTHPFL----GPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLF--SVEVLTGMGIDPAMRAENISVAQYCQMANYL
General information:
TITO was launched using:
RESULT:
Template:
4ADV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160916 for 1924 contacts (-83.6/contact) +
2D Compatibility (PS) -25761 + (NN) -15103 + (LL) 1176
1D Compatibility (HY) -20000 + (ID) 4350
Total energy: -224954.0 ( -116.92 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_4ADV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ADV-query.scw
PDB file :
Tito_Scwrl_4ADV.pdb
: