Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLAKGKEMGKLEGKIALIAGASGGMGSAVAKRFVREGAYVILISRSIDNLKQLYDEIEKLDEFKEGSVKLIQLDLLDF--ENVKILANMIESLKLSESGALDILVACTGILGKLNLVHDCELEELQNVMNTNFTANWYLLKNLDPVLKKSNSGRVIFMTSEVTLSPSSYPYWVPYAASKAALEIMVKIYASETKHTKLCVNAVYSEGPVDSEMYKQAFPGKDISELILPNKLTDKFVELASEDCSISGQVLPLSKSLE
3F5Q Chain:A ((12-233))
-----------LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI---NEETGRQPQWFILDLLTCTSEDCQQLAQRIA----VNYPRLDGVLHNAGLLGDVCPMSEQDPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA--NWGAYAASKFATEGMMQVLADEYQQ-RLRVNCI-NPGGTR-------------QKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP--
General information:
TITO was launched using:
RESULT:
Template:
3F5Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152041 for 1675 contacts (-90.8/contact) +
2D Compatibility (PS) -22407 + (NN) -11264 + (LL) 2184
1D Compatibility (HY) -12800 + (ID) 3350
Total energy: -199678.0 ( -119.21 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_3F5Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F5Q-query.scw
PDB file :
Tito_Scwrl_3F5Q.pdb
: