Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVILKENIRTLGKLGEIVKVKPGYARNFLFPQRKAVKATKESIAKLEEQRSFLEEENIRKLNLASELAASF-AGKFVILVKQASEDGKIFGSVTTREVARSLSQE-YEVDHRKISF-NGVKIRNLGEYQASIEFHSEIVVQVAVHVVRSETDAHELRQVKSQSQKSQQQEAKQNEVGEATDSDKADQK
5AKA Chain:H ((1-147))
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGV-LRTTGEHEVSFQVHSEVFAKVIVNVVAE---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5AKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43670 for 915 contacts (-47.7/contact) +
2D Compatibility (PS) -14292 + (NN) 5201 + (LL) 2468
1D Compatibility (HY) -11200 + (ID) 3050
Total energy: -64543.0 ( -70.54 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_5AKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AKA-query.scw
PDB file :
Tito_Scwrl_5AKA.pdb
: