Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDSIKDILELDEELLSNEQKTFKSFYNINIEYSQKWPNITAKKQPLHTAEKYKEKKDKTAYFNENLE
1FDB Chain:A ((4-104))
----VTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVP--------------EDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHLER---
General information:
TITO was launched using:
RESULT:
Template:
1FDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51550 for 741 contacts (-69.6/contact) +
2D Compatibility (PS) -10327 + (NN) -4165 + (LL) 1564
1D Compatibility (HY) -12800 + (ID) 2950
Total energy: -80228.0 ( -108.27 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1FDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDB-query.scw
PDB file :
Tito_Scwrl_1FDB.pdb
: