Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVENEGVLLVLSSPSGAGKTTILERLLERSTNLVRSVSMTTRKPRPGEINGKDYFFVTKKEFHELCEAGQMLEYARVFENFYGIPKSFIEQNLSSGISVLLSIDWQGAFHLFELMREKVISVFILPPSMEELRLRLQKRNSDSASEIEHRLAEAQKEMSKRDKYDYVVINDDIDKSVEEISSILDKERLKRSGV
3TR0 Chain:A ((5-191))
----NKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELF-PPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDNFDQAVQNLIHIISAERLQRDVQ
General information:
TITO was launched using:
RESULT:
Template:
3TR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91890 for 1410 contacts (-65.2/contact) +
2D Compatibility (PS) -21674 + (NN) -19746 + (LL) 748
1D Compatibility (HY) -17200 + (ID) 4050
Total energy: -153812.0 ( -109.09 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_3TR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR0-query.scw
PDB file :
Tito_Scwrl_3TR0.pdb
: