Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNDYLSLLNPEQQSAVTKVDGPVLILAGAGTGKTRTITSRIAHIIRNGYAHSDEILAVTFTNKAANEMVSRVLKLT-GTNILWLGTFHAIAAKILRRHADIVGLNPNFTIIGVDDQLQVIKNIINEVSPNNLSEKHSTIMNTIQKWKEKCLLPSEVEETQLFRPIYIIAL------KVYHQYQERLKFLNSVDFGDLLLYNIQLFNQKTEILSYYQGKFKYIMVDEYQDTNVIQYLWLKYLAKEHSNICCVGDDDQSIYSWRGAEVKNILKFSDDFKNAKIIKLECNYRSTSHILATASYVINHNKTRLEKKLWTTNIKGEKVNLIKLWDGKAEARFISEQILKLN--KYRFSDMAVLVRATFQTRVLEEYFIKYSIPYKIISGVKFYERQEVRDVIAYLRLVTNNNDDLAFERIVNRPKRSIGPTTLKKIYTVAQGNKTSFFEAAKILVNSNQVIEKIKLSLNDFFNKIKAWEEMISVKPLHKFVKTIANQSGYIEMLENEEVTGLARIENVKELISSLKNF--DNA------TTFLEHISLVMEVDNMNN--------DDTVHVMTLHAAKGLEFPCVFLPGWEEGLFPHQRSF-EDKSGKALEEERRLAYVGITRAKEKLIISCADRREINNQWQPMYASRFLKELPRENVEVIKSNIAYC |
| 4C2U Chain:A ((8-648)) | --DLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPG---ETQPRVIRGIIDRAKSNLWTPDDLDRS---REPFISGLPRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQN-ILDRGAHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEANVGGSIADFLDDAALLSSVDDMRTKAENKGAPEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSG--IEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C2U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -291153 for 5241 contacts (-55.6/contact) +
2D Compatibility (PS) -65338 + (NN) -23884 + (LL) 900
1D Compatibility (HY) -41600 + (ID) 12300
Total energy: -433375.0 ( -82.69 by residue)
QMean score : 0.468
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