Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIHSDSPRQCLEEIIKSASAKFNESIDIAVNLGIDSRKSEEQVRGTVVLPKGIGKDIKVAVFTQGKHLLEAEKAGANIVGGEDLVQEIKKGKKLDVDWCITTPDFIAKI-TPIAKILGAKGLMPNPKFGTMTSNVAEAIKTIKSGQIKFRTDKNGIIHGKLGNIKFSVDDLLKNLKAFLKVIKSNKPISVKGVYFKSVFLNSTMGKAYKMSKVEDII
3UMY Chain:A ((33-225))
------------------ATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGW-MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTAMGPSVRINPHS---
General information:
TITO was launched using:
RESULT:
Template:
3UMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101899 for 1502 contacts (-67.8/contact) +
2D Compatibility (PS) -21071 + (NN) -13611 + (LL) 1632
1D Compatibility (HY) -15200 + (ID) 4000
Total energy: -154149.0 ( -102.63 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3UMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UMY-query.scw
PDB file :
Tito_Scwrl_3UMY.pdb
: