Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRTFQPKNLIRKRRHGFRSRMATRAGRKILNRRRSLGCKKLCA
1VQ8 Chain:M ((42-70))
-----RPTRLDKARSQGYKA----KQGVIVARVSVRKGSARKRR
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6721 for 106 contacts (63.4/contact) +
2D Compatibility (PS) -3153 + (NN) -1362 + (LL) 1060
1D Compatibility (HY) 0 + (ID) 300
Total energy: 2966.0 ( 27.98 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: