Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMLDKENPIIKEFEEAGAILHGHFVLSSGLHSDTYTQCAKIFENPSRAMKVCELLANKIKKELNSSIDLILSPAIGGIIVGYEIGRQLRMKTMFCERVNGKFELRRGFEIKRGEKILLVEDVITTGKSSLEAVKCAEDMGGKVVAEASLIKRNSET-KLPFSIISLLELSIKNYSEAELPEELKKLPIIKPGSREYLSNCSK
4RV4 Chain:A ((47-199))
-----------------------FTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHF-PTVEVIAGTATAGIAHAAWVSDRMDLPMCYVR-------QIEG-KAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNP
General information:
TITO was launched using:
RESULT:
Template:
4RV4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83259 for 1110 contacts (-75.0/contact) +
2D Compatibility (PS) -14798 + (NN) 682 + (LL) 2184
1D Compatibility (HY) -6800 + (ID) 1650
Total energy: -103641.0 ( -93.37 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_4RV4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV4-query.scw
PDB file :
Tito_Scwrl_4RV4.pdb
: