Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATHLSFRQGVQECIPTLLGYAGVGISFGIVASSQNFSILEIILLCLVIYAGAAQFIMCALFIAGTPISAIVLTVFIVNSRMFLLSMSLAPNFKTYGFWNRVGLGSLVTDETFGVAITPYLKGEAINDRWMHGLNITAYLFWAISCVAGALFGEYISNPQTLGLDFAITAMFIFLAIAQFESITKSRLRIYIVLIIAVIVMMLSLSMFMPSYLAILIAATISAALGVMMER |
2LS4 Chain:A ((5-17)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LCIAVAAGAGTGY---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LS4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2616 for 43 contacts (-60.8/contact) +
2D Compatibility (PS) -1308 + (NN) 1036 + (LL) 20100
1D Compatibility (HY) -800 + (ID) 200
Total energy: 16212.0 ( 377.02 by residue)
QMean score : -0.389
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