Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE
1NXO Chain:A ((2-119))
--KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM---IDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRS-----------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79723 for 908 contacts (-87.8/contact) +
2D Compatibility (PS) -12804 + (NN) -8987 + (LL) 8128
1D Compatibility (HY) -13600 + (ID) 3550
Total energy: -110536.0 ( -121.74 by residue)
QMean score : 0.679
(partial model without unconserved sides chains):
PDB file :
Tito_1NXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NXO-query.scw
PDB file :
Tito_Scwrl_1NXO.pdb
: