Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMFVLCGFIFPLTVTALGQVLFPEQANGSLVKQDGKVIGSKLIGQQWTEPKYFHGRISAVNYNMNANEVKESGGPASGGSNYGNSNPELKKRVQETIKQEGKKISSDAVTASGSGLDPDITV
2YJ5 Chain:A ((164-206))
-------------------------------------------------------------------DKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKV------------------
General information:
TITO was launched using:
RESULT:
Template:
2YJ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7457 for 156 contacts (47.8/contact) +
2D Compatibility (PS) -4113 + (NN) -1271 + (LL) 5076
1D Compatibility (HY) -1600 + (ID) 700
Total energy: 4849.0 ( 31.08 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_2YJ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJ5-query.scw
PDB file :
Tito_Scwrl_2YJ5.pdb
: