Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEDLKESLKSLGWWDLFFAIPMFLLFAYLPNYNFITIFLNIVIIIFFSIGLILTTHIIIDKIKSNTK
2DW3 Chain:A ((23-46))
---AFQMMKGAGWAGGVFFGTLLLIGF----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DW3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6355 for 108 contacts (-58.8/contact) +
2D Compatibility (PS) -2481 + (NN) -99 + (LL) 3972
1D Compatibility (HY) -800 + (ID) 250
Total energy: -6013.0 ( -55.68 by residue)
QMean score : -0.113
(partial model without unconserved sides chains):
PDB file :
Tito_2DW3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DW3-query.scw
PDB file :
Tito_Scwrl_2DW3.pdb
: