Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKRVNKLVLGISFLFLIISIFAGCGTGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRDDQFDKNDKGTWIVRSSMSIQSNGKDMNIKGMVLYMNRNTRTTNGYYYVDVIEREDKGIHRDNEKRYPVKMVDNKIIPTKEIKDEKIKKEIENFKFFVQYGDFKDLSKYKDGDISYNPEVPSYSAKYQLTNDDYNVKQLRKRYNIPTNKAPKLLLKGTGNLKGSSIGYKKIEFTFVEKKGENIYFSDGLHFNPSEDK
4EGD Chain:B ((27-252))
---------------------------GRNAQIKDTFNQTLKLYPTKNLDDFYDKEGFRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMT-------KDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVENKEENIYFTDSVQYTPS---
General information:
TITO was launched using:
RESULT:
Template:
4EGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42998 for 1621 contacts (-26.5/contact) +
2D Compatibility (PS) -23806 + (NN) -11913 + (LL) 2900
1D Compatibility (HY) -24800 + (ID) 7500
Total energy: -108117.0 ( -66.70 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_4EGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EGD-query.scw
PDB file :
Tito_Scwrl_4EGD.pdb
: