Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYV--ENFYL----HRGYTLQQKIKILISLYIVI-GFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
4LWJ Chain:A ((118-184))
---------------------------------------------------EKIYTEIVPLENFYLAEGYHQKYYLQNTTKLYQTLKAIYGGFGNLVRSTLAARMNGYIAGNLSIASL----------------
General information:
TITO was launched using:
RESULT:
Template:
4LWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45823 for 316 contacts (-145.0/contact) +
2D Compatibility (PS) -5763 + (NN) 2941 + (LL) 6008
1D Compatibility (HY) -4000 + (ID) 1200
Total energy: -47837.0 ( -151.38 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_4LWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWJ-query.scw
PDB file :
Tito_Scwrl_4LWJ.pdb
: