Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNW-AIAHMTG--VLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
2LTP Chain:A ((19-62))
-----------------------------------NWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLK-MEKE---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1654 for 190 contacts (-8.7/contact) +
2D Compatibility (PS) -4241 + (NN) -1524 + (LL) 5152
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -6717.0 ( -35.35 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_2LTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LTP-query.scw
PDB file :
Tito_Scwrl_2LTP.pdb
: