Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLITYQIILFFIISLSYYLTLNHYMAVTVGNFTSIFGMFAAILFMYYYLLYKSPEYNQRKRFKHFIHITNLIIIAFSTFVLVHLALKLFFSI
1V54 Chain:M ((19-43))
-----------------------------------LSVTFLSFLLPAGWVLYHLDNYKKS---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1V54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8469 for 97 contacts (-87.3/contact) +
2D Compatibility (PS) -2694 + (NN) -3440 + (LL) 7716
1D Compatibility (HY) -2000 + (ID) 250
Total energy: -9137.0 ( -94.20 by residue)
QMean score : -0.126
(partial model without unconserved sides chains):
PDB file :
Tito_1V54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V54-query.scw
PDB file :
Tito_Scwrl_1V54.pdb
: