Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNDLLVMSVVYILTSVIMFYINGLSKQFFTYVVGFPIIY----FGYICLVNLIKKRSRNN
3O5Y Chain:A ((96-116))
--------------------------------SILVIPIYSKNKRVGVLSIGR---------
General information:
TITO was launched using:
RESULT:
Template:
3O5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12738 for 59 contacts (-215.9/contact) +
2D Compatibility (PS) -2050 + (NN) -263 + (LL) 3732
1D Compatibility (HY) -2000 + (ID) 150
Total energy: -13469.0 ( -228.29 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3O5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O5Y-query.scw
PDB file :
Tito_Scwrl_3O5Y.pdb
: