Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSKDRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGF--ISAKGKE---TPRNLMAFKDGTINPRKSNQLKDYVFI----DD---GWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLAKEAN---TSILRRAFNYVDGTDDRTGNFETGLLFIAFQ-KATKQFIDIQNNL-GSNDKLNEYITHRGSASFLVLPGVSKGGYLGETLFD |
4GS1 Chain:A ((97-394)) | ----------------------------------------------------------------------------------------SAGLLPASLMVTIGIGGSLLEAMDAADRRPDALADLPEFATDDLRPRWCGGDLMLQVGAEDPMVLAAAVDELVAATAPTTTVRWSLRGFRRTAAAAQDPDATPRNLMGQIDGTANPAQDHPLFTRTVTAPPADDPAHAWMDGGSYLVVRRIRMLLDEWRRLDVPDRERVIGRHLDTGAPLGGEKETDPVVLTARDADGRLVIPEDAHVRLANPENNLGARMVRRGYNYDEGWRD-DGVRDAGLLFMAWQGNPATGFVPVQRSLVEQGDALNRYTRHEGSALFAV-PAATADRYPGQDLVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GS1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60589 for 2012 contacts (-30.1/contact) +
2D Compatibility (PS) -30021 + (NN) -9627 + (LL) 4568
1D Compatibility (HY) -17200 + (ID) 5550
Total energy: -118419.0 ( -58.86 by residue)
QMean score : 0.364
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