Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
4GSY Chain:A ((2-204))
-SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII---------DQEDLKFHEKVIEGYQEIIH---QRFKSVNADQPLENVVEDTYQTIIKYLEK-
General information:
TITO was launched using:
RESULT:
Template:
4GSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91947 for 1522 contacts (-60.4/contact) +
2D Compatibility (PS) -20812 + (NN) -9431 + (LL) 704
1D Compatibility (HY) -28400 + (ID) 9550
Total energy: -159436.0 ( -104.75 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_4GSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GSY-query.scw
PDB file :
Tito_Scwrl_4GSY.pdb
: